#include <stdio.h>

Include dependency graph for global.h:

This graph shows which files directly or indirectly include this file:

Macros
#define	EXTERN extern

#define	NDIM 2

#define	Sqr(x)

#define	SignR(x, y)

Typedefs
typedef double	real

Variables
double *	rx

double *	ry

double *	vx

double *	vy

double *	ax

double *	ay

double *	fx

double *	fy

double *	speed

double	region [2+1]

double	regionH [2+1]

double	deltaT

double	timeNow

double	potEnergy

double	kinEnergy

double	totEnergy

double	density

double	pressure

double	rCut

double	kappa

double	uSum

double	virSum

double	svirSum

double	vSum

double	vSumX

double	vSumY

double	vvSum

double	sPotEnergy

double	sKinEnergy

double	sTotEnergy

double	sPressure

double	ssPotEnergy

double	ssKinEnergy

double	ssTotEnergy

double	ssPressure

int	initUcell [2+1]

int	moreCycles

int	nAtom

int	stepAvg

int	stepCount

int	stepEquil

int	stepLimit

int	stepTraj

int	stepDump

double	RadiusIJ

double	SqrRadiusIJ

double	RadiusIJInv

int	nAtomType

int *	atomType

int *	atomID

double *	atomRadius

double *	atomMass

double	TotalMass

double	mass

int	nBond

int	nBondType

int *	atom1

int *	atom2

int *	BondID

int *	BondType

double *	kb

double *	ro

double *	BondEnergy

double *	BondLength

double	TotalBondEnergy

double	BondEnergyPerAtom

double	gamman

double *	discDragx

double *	discDragy

double *	nodeDragx

double *	nodeDragy

double	strain

double	strainRate

double	shearDisplacement

double	shearVelocity

double	VSqr

double	VMeanSqr

double	VRootMeanSqr

double	ComX

double	ComY

double	ComX0

double	ComY0

double	ComXRatio

double	ComYRatio

double	HaltCondition

double	DeltaY

double	DeltaX

int *	ImageX

int *	ImageY

double *	rxUnwrap

double *	ryUnwrap

double	Kn

double	fxExtern

double	fyExtern

double	FyBylx

double	fxByfy

double	forceSumxExtern

double	forceSumyExtern

int	DampFlag

double	strech

char	mode [64]

char	inputConfig [128]

int	dumpPairFlag

int	nPairTotal

int	nPairActive

int *	PairID

int *	Pairatom1

int *	Pairatom2

double *	PairXij

double *	PairYij

char	solver [128]

char	xBoundary [10]

char	yBoundary [10]

int *	molID

int **	isBonded

double	InterfaceWidth

double	bigDiameter

int	nAtomInterface

int	nDiscInterface

int	nAtomBlock

int *	atomIDInterface

int	BondPairFlag

int	nAtomInterfaceTotal

int *	cellList

int	cells [2+1]

int	rank

int	size

int	master

double *	fax

double *	fay

double	fuSum

double	fvirSum

double	frfAtom

double	uSumPair

double	uSumPairPerAtom

double	virSumPair

double	virSumPairxx

double	virSumPairyy

double	virSumPairxy

double	virSumBond

double	virSumBondxx

double	virSumBondyy

double	virSumBondxy

double	virSumxx

double	virSumyy

double	virSumxy

int	freezeAtomType

double **	cfOrg

double **	spacetimeCorr

double *	cfVal

double *	spacetimeCorrAv

int *	indexCorr

int	countCorrAv

int	limitCorrAv

int	nBuffCorr

int	nFunCorr

int	nValCorr

int	stepCorr

double	rfAtom

double *	indexAcf

double **	viscAcf

double *	viscAcfOrg

double *	viscAcfAv

double	viscAcfInt

int	nValAcf

int	nBuffAcf

int	stepAcf

int	countAcfAv

int	limitAcfAv

double *	histRdf

double	rangeRdf

int	countRdf

int	limitRdf

int	sizeHistRdf

int	stepRdf

char *	prefix

char	result [250]

FILE *	fpresult

char	xyz [256]

FILE *	fpxyz

char	bond [256]

FILE *	fpbond

char	dump [256]

FILE *	fpdump

char	dnsty [256]

FILE *	fpdnsty

char	visc [256]

FILE *	fpvisc

char	rdf [256]

FILE *	fprdf

char	vrms [256]

FILE *	fpvrms

char	stress [256]

FILE *	fpstress

char	momentum [256]

FILE *	fpmomentum

char	force [256]

FILE *	fpforce

char	com [256]

FILE *	fpcom

char	pair [256]

FILE *	fppair

Macro Definition Documentation

◆ EXTERN

#define EXTERN extern

Definition at line 8 of file global.h.

◆ NDIM

#define NDIM 2

Definition at line 13 of file global.h.

Referenced by ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), EvalProps(), EvalRdf(), EvalSpacetimeCorr(), and LeapfrogStep().

◆ SignR

#define SignR	(		x,
			y )

Value:

(((y) >= 0) ? (x) : (- (x)))

Definition at line 15 of file global.h.

Referenced by EvalRdf(), and LeapfrogStep().

◆ Sqr

#define Sqr ( x )

Value:

((x) * (x))

Definition at line 14 of file global.h.

Referenced by AccumProps(), BrownianStep(), ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), EvalProps(), EvalRdf(), EvalVrms(), and LeapfrogStep().

Typedef Documentation

◆ real

typedef double real

Definition at line 11 of file global.h.

Variable Documentation

◆ atom1

int* atom1

extern

Referenced by Close(), ComputeBondForce(), DumpBonds(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ atom2

int * atom2

Definition at line 36 of file global.h.

Referenced by Close(), ComputeBondForce(), DumpBonds(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ atomID

int* atomID

extern

Referenced by Close(), DumpRestart(), DumpState(), Init(), ReadBinaryRestart(), Trajectory(), and WriteBinaryRestart().

◆ atomIDInterface

int* atomIDInterface

extern

Referenced by Close(), ComputePairForce(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ atomMass

double* atomMass

extern

Referenced by Close(), ComputePairForce(), EvalCom(), EvalProps(), Init(), ReadBinaryRestart(), VelocityVerletStep(), and WriteBinaryRestart().

◆ atomRadius

double* atomRadius

extern

Referenced by ApplyBoundaryCond(), Close(), ComputeForcesCells(), ComputePairForce(), DumpRestart(), DumpState(), Init(), ReadBinaryRestart(), Trajectory(), and WriteBinaryRestart().

◆ atomType

int* atomType

extern

Referenced by ApplyDrivingForce(), Close(), DumpRestart(), DumpState(), Init(), PrintForceSum(), ReadBinaryRestart(), Trajectory(), VelocityVerletStep(), and WriteBinaryRestart().

◆ ax

double * ax

Definition at line 17 of file global.h.

Referenced by ApplyDrivingForce(), ApplyViscous(), BrownianStep(), Close(), ComputeForcesCells(), DumpState(), EvalProps(), EvalVacf(), Init(), LeapfrogStep(), ReadBinaryRestart(), VelocityVerletStep(), and WriteBinaryRestart().

◆ ay

double * ay

Definition at line 17 of file global.h.

Referenced by ApplyDrivingForce(), ApplyViscous(), BrownianStep(), Close(), ComputeForcesCells(), DumpState(), EvalProps(), EvalVacf(), Init(), LeapfrogStep(), ReadBinaryRestart(), VelocityVerletStep(), and WriteBinaryRestart().

◆ bigDiameter

double bigDiameter

Definition at line 75 of file global.h.

Referenced by Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ bond

char bond[256]

extern

Referenced by main().

◆ BondEnergy

double* BondEnergy

extern

Referenced by ComputeBondForce(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ BondEnergyPerAtom

double BondEnergyPerAtom

Definition at line 40 of file global.h.

Referenced by EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ BondID

int* BondID

extern

Referenced by Close(), DumpBonds(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ BondLength

double * BondLength

Definition at line 39 of file global.h.

Referenced by ComputeBondForce(), DumpBonds(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ BondPairFlag

int BondPairFlag

extern

◆ BondType

int * BondType

Definition at line 37 of file global.h.

Referenced by Close(), DumpBonds(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ cellList

int* cellList

extern

Referenced by Close(), ComputeForcesCells(), Init(), and ReadBinaryRestart().

◆ cells

int cells[2+1]

Definition at line 83 of file global.h.

Referenced by ComputeForcesCells(), Init(), and ReadBinaryRestart().

◆ cfOrg

double** cfOrg

extern

Referenced by AllocArrays(), Close(), and EvalSpacetimeCorr().

◆ cfVal

double * cfVal

Definition at line 94 of file global.h.

Referenced by AllocArrays(), Close(), and EvalSpacetimeCorr().

◆ com

char com[256]

extern

Referenced by main().

◆ ComX

double ComX

extern

Referenced by EvalCom(), and PrintCom().

◆ ComX0

double ComX0

Definition at line 47 of file global.h.

Referenced by EvalCom().

◆ ComXRatio

double ComXRatio

Definition at line 47 of file global.h.

Referenced by EvalCom().

◆ ComY

double ComY

Definition at line 47 of file global.h.

Referenced by EvalCom(), and PrintCom().

◆ ComY0

double ComY0

Definition at line 47 of file global.h.

Referenced by EvalCom().

◆ ComYRatio

double ComYRatio

Definition at line 47 of file global.h.

Referenced by EvalCom().

◆ countAcfAv

int countAcfAv

Definition at line 100 of file global.h.

Referenced by AccumVacf(), and ZeroVacf().

◆ countCorrAv

int countCorrAv

Definition at line 95 of file global.h.

Referenced by EvalSpacetimeCorr(), and SetupJob().

◆ countRdf

int countRdf

extern

Referenced by EvalRdf(), and SetupJob().

◆ DampFlag

int DampFlag

extern

Referenced by ComputeBondForce(), ComputePairForce(), Init(), and ReadBinaryRestart().

◆ deltaT

double deltaT

Definition at line 20 of file global.h.

Referenced by AccumVacf(), BrownianStep(), EvalProps(), EvalSpacetimeCorr(), EvalVacf(), Init(), LeapfrogStep(), main(), PrintVacf(), ReadBinaryRestart(), and VelocityVerletStep().

◆ DeltaX

double DeltaX

Definition at line 49 of file global.h.

Referenced by DisplaceAtoms(), Init(), and ReadBinaryRestart().

◆ DeltaY

double DeltaY

extern

Referenced by DisplaceAtoms(), Init(), and ReadBinaryRestart().

◆ density

double density

Definition at line 20 of file global.h.

Referenced by EvalProps(), Init(), and ReadBinaryRestart().

◆ discDragx

double* discDragx

extern

Referenced by ComputeForcesCells(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ discDragy

double * discDragy

Definition at line 42 of file global.h.

Referenced by ComputeForcesCells(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ dnsty

char dnsty[256]

extern

◆ dump

char dump[256]

extern

◆ dumpPairFlag

int dumpPairFlag

extern

◆ fax

double* fax

extern

Referenced by Close(), and Init().

◆ fay

double * fay

Definition at line 85 of file global.h.

Referenced by Close(), and Init().

◆ force

char force[256]

extern

Referenced by main().

◆ forceSumxExtern

double forceSumxExtern

Definition at line 53 of file global.h.

Referenced by ApplyForce(), PrintForceSum(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ forceSumyExtern

double forceSumyExtern

Definition at line 53 of file global.h.

Referenced by ApplyForce(), PrintForceSum(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ fpbond

FILE* fpbond

extern

Referenced by DumpBonds(), and main().

◆ fpcom

FILE* fpcom

extern

Referenced by Init(), main(), PrintCom(), and ReadBinaryRestart().

◆ fpdnsty

FILE* fpdnsty

extern

Referenced by EvalSpacetimeCorr().

◆ fpdump

FILE* fpdump

extern

◆ fpforce

FILE* fpforce

extern

Referenced by Init(), main(), PrintForceSum(), and ReadBinaryRestart().

◆ fpmomentum

FILE* fpmomentum

extern

Referenced by PrintMomentum().

◆ fppair

FILE* fppair

extern

Referenced by DumpPairs(), and main().

◆ fprdf

FILE* fprdf

extern

Referenced by EvalRdf().

◆ fpresult

FILE* fpresult

extern

Referenced by ApplyBoundaryCond(), HaltConditionCheck(), Init(), main(), PrintSummary(), and ReadBinaryRestart().

◆ fpstress

FILE* fpstress

extern

Referenced by PrintStress().

◆ fpvisc

FILE* fpvisc

extern

Referenced by PrintVacf().

◆ fpvrms

FILE* fpvrms

extern

Referenced by Init(), main(), PrintVrms(), and ReadBinaryRestart().

◆ fpxyz

FILE* fpxyz

extern

Referenced by main(), and Trajectory().

◆ freezeAtomType

int freezeAtomType

extern

Referenced by Init(), and VelocityVerletStep().

◆ frfAtom

double frfAtom

Definition at line 85 of file global.h.

◆ fuSum

double fuSum

Definition at line 85 of file global.h.

◆ fvirSum

double fvirSum

Definition at line 85 of file global.h.

◆ fx

double * fx

Definition at line 17 of file global.h.

Referenced by ApplyForce(), Close(), ComputeBondForce(), ComputePairForce(), Init(), PrintForceSum(), ReadBinaryRestart(), Trajectory(), VelocityVerletStep(), and WriteBinaryRestart().

◆ fxByfy

double fxByfy

Definition at line 53 of file global.h.

Referenced by ApplyForce(), Init(), and ReadBinaryRestart().

◆ fxExtern

double fxExtern

extern

Referenced by ApplyForce().

◆ fy

double * fy

Definition at line 17 of file global.h.

Referenced by ApplyForce(), Close(), ComputeBondForce(), ComputePairForce(), Init(), PrintForceSum(), ReadBinaryRestart(), Trajectory(), VelocityVerletStep(), and WriteBinaryRestart().

◆ FyBylx

double FyBylx

Definition at line 53 of file global.h.

Referenced by ApplyForce(), Init(), and ReadBinaryRestart().

◆ fyExtern

double fyExtern

Definition at line 53 of file global.h.

Referenced by ApplyForce().

◆ gamman

double gamman

extern

Referenced by ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), Init(), and ReadBinaryRestart().

◆ HaltCondition

double HaltCondition

extern

Referenced by HaltConditionCheck(), Init(), and ReadBinaryRestart().

◆ histRdf

double* histRdf

extern

Referenced by AllocArrays(), and EvalRdf().

◆ ImageX

int* ImageX

extern

Referenced by Close(), EvalUnwrap(), Init(), ReadBinaryRestart(), VelocityVerletStep(), and WriteBinaryRestart().

◆ ImageY

int * ImageY

Definition at line 50 of file global.h.

Referenced by Close(), EvalUnwrap(), Init(), ReadBinaryRestart(), VelocityVerletStep(), and WriteBinaryRestart().

◆ indexAcf

double* indexAcf

extern

Referenced by AccumVacf(), AllocArrays(), Close(), EvalVacf(), and InitVacf().

◆ indexCorr

int* indexCorr

extern

Referenced by AllocArrays(), Close(), EvalSpacetimeCorr(), and SetupJob().

◆ initUcell

int initUcell[2+1]

extern

◆ inputConfig

char inputConfig[128]

Definition at line 58 of file global.h.

Referenced by Init().

◆ InterfaceWidth

double InterfaceWidth

extern

Referenced by Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ isBonded

int** isBonded

extern

Referenced by Close(), ComputePairForce(), Init(), and ReadBinaryRestart().

◆ kappa

double kappa

Definition at line 21 of file global.h.

Referenced by Init(), LeapfrogStep(), and ReadBinaryRestart().

◆ kb

double* kb

extern

Referenced by Close(), ComputeBondForce(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ kinEnergy

double kinEnergy

Definition at line 20 of file global.h.

Referenced by AccumProps(), AccumVacf(), EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ Kn

double Kn

extern

Referenced by ComputePairForce(), and Init().

◆ limitAcfAv

int limitAcfAv

Definition at line 100 of file global.h.

Referenced by AccumVacf(), and Init().

◆ limitCorrAv

int limitCorrAv

Definition at line 95 of file global.h.

Referenced by EvalSpacetimeCorr(), and Init().

◆ limitRdf

int limitRdf

Definition at line 104 of file global.h.

Referenced by EvalRdf(), and Init().

◆ mass

double mass

extern

Referenced by Init(), and ReadBinaryRestart().

◆ master

int master

Definition at line 84 of file global.h.

◆ mode

char mode[64]

extern

Referenced by Init().

◆ molID

int* molID

extern

Referenced by ApplyForce(), Close(), DisplaceAtoms(), DumpRestart(), DumpState(), EvalCom(), Init(), ReadBinaryRestart(), Trajectory(), and WriteBinaryRestart().

◆ momentum

char momentum[256]

extern

◆ moreCycles

int moreCycles

Definition at line 24 of file global.h.

Referenced by main().

◆ nAtom

int nAtom

◆ nAtomBlock

int nAtomBlock

Definition at line 76 of file global.h.

Referenced by ApplyForce(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nAtomInterface

int nAtomInterface

extern

Referenced by ComputePairForce(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nAtomInterfaceTotal

int nAtomInterfaceTotal

extern

◆ nAtomType

int nAtomType

extern

Referenced by DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nBond

int nBond

extern

Referenced by ComputeBondForce(), DumpBonds(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nBondType

int nBondType

Definition at line 35 of file global.h.

Referenced by DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nBuffAcf

int nBuffAcf

Definition at line 100 of file global.h.

Referenced by AccumVacf(), AllocArrays(), Close(), EvalVacf(), Init(), and InitVacf().

◆ nBuffCorr

int nBuffCorr

Definition at line 95 of file global.h.

Referenced by AllocArrays(), Close(), EvalSpacetimeCorr(), Init(), and SetupJob().

◆ nDiscInterface

int nDiscInterface

Definition at line 76 of file global.h.

Referenced by Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nFunCorr

int nFunCorr

Definition at line 95 of file global.h.

Referenced by AllocArrays(), EvalSpacetimeCorr(), Init(), and SetupJob().

◆ nodeDragx

double * nodeDragx

Definition at line 42 of file global.h.

Referenced by ComputeBondForce(), DumpBonds(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nodeDragy

double * nodeDragy

Definition at line 42 of file global.h.

Referenced by ComputeBondForce(), DumpBonds(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nPairActive

int nPairActive

Definition at line 62 of file global.h.

Referenced by ComputePairForce(), DumpPairs(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nPairTotal

int nPairTotal

extern

Referenced by ComputePairForce(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ nValAcf

int nValAcf

extern

Referenced by AccumVacf(), AllocArrays(), Init(), InitVacf(), PrintVacf(), and ZeroVacf().

◆ nValCorr

int nValCorr

Definition at line 95 of file global.h.

Referenced by AllocArrays(), EvalSpacetimeCorr(), Init(), and SetupJob().

◆ pair

char pair[256]

extern

Referenced by main().

◆ Pairatom1

int * Pairatom1

Definition at line 63 of file global.h.

Referenced by Close(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ Pairatom2

int * Pairatom2

Definition at line 63 of file global.h.

Referenced by Close(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ PairID

int* PairID

extern

Referenced by Close(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ PairXij

double* PairXij

extern

Referenced by Close(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ PairYij

double * PairYij

Definition at line 64 of file global.h.

Referenced by Close(), ComputePairForce(), DumpPairs(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ potEnergy

double potEnergy

Definition at line 20 of file global.h.

Referenced by AccumProps(), EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ prefix

char* prefix

extern

Definition at line 13 of file main.c.

Referenced by DumpRestart(), DumpState(), main(), and WriteBinaryRestart().

◆ pressure

double pressure

Definition at line 21 of file global.h.

Referenced by AccumProps(), EvalProps(), HaltConditionCheck(), PrintStress(), and PrintSummary().

◆ RadiusIJ

double RadiusIJ

extern

Referenced by ComputeForcesCells(), and ComputePairForce().

◆ RadiusIJInv

double RadiusIJInv

Definition at line 27 of file global.h.

Referenced by ComputeForcesCells(), and ComputePairForce().

◆ rangeRdf

double rangeRdf

Definition at line 103 of file global.h.

Referenced by EvalRdf(), and Init().

◆ rank

int rank

extern

Referenced by ComputeForcesCells().

◆ rCut

double rCut

Definition at line 21 of file global.h.

Referenced by Init(), LeapfrogStep(), and ReadBinaryRestart().

◆ rdf

char rdf[256]

extern

◆ region

double region[2+1]

extern

Referenced by AccumVacf(), ApplyBoundaryCond(), ApplyLeesEdwardsBoundaryCond(), ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), DumpRestart(), EvalRdf(), EvalSpacetimeCorr(), EvalUnwrap(), Init(), LeapfrogStep(), ReadBinaryRestart(), VelocityVerletStep(), and WriteBinaryRestart().

◆ regionH

double regionH[2+1]

Definition at line 20 of file global.h.

Referenced by ApplyBoundaryCond(), ApplyForce(), ApplyLeesEdwardsBoundaryCond(), ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), DumpBonds(), DumpPairs(), DumpState(), EvalRdf(), Init(), LeapfrogStep(), ReadBinaryRestart(), Trajectory(), and VelocityVerletStep().

◆ result

char result[250]

extern

Referenced by main().

◆ rfAtom

double rfAtom

extern

Referenced by ComputeForcesCells(), and EvalVacf().

◆ ro

double * ro

Definition at line 38 of file global.h.

Referenced by Close(), ComputeBondForce(), DumpBonds(), DumpRestart(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ rx

double* rx

extern

◆ rxUnwrap

double* rxUnwrap

extern

Referenced by Close(), EvalCom(), EvalUnwrap(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ ry

double * ry

Definition at line 17 of file global.h.

Referenced by ApplyBoundaryCond(), ApplyLeesEdwardsBoundaryCond(), ApplyShear(), BrownianStep(), Close(), ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), DisplaceAtoms(), DumpRestart(), DumpState(), EvalRdf(), EvalUnwrap(), Init(), LeapfrogStep(), ReadBinaryRestart(), Trajectory(), VelocityVerletStep(), and WriteBinaryRestart().

◆ ryUnwrap

double * ryUnwrap

Definition at line 51 of file global.h.

Referenced by Close(), EvalCom(), EvalUnwrap(), Init(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ shearDisplacement

double shearDisplacement

extern

Referenced by ApplyLeesEdwardsBoundaryCond(), ComputeBondForce(), ComputePairForce(), and Init().

◆ shearVelocity

double shearVelocity

Definition at line 45 of file global.h.

Referenced by Init().

◆ size

int size

Definition at line 84 of file global.h.

Referenced by ComputeForcesCells().

◆ sizeHistRdf

int sizeHistRdf

Definition at line 104 of file global.h.

Referenced by AllocArrays(), EvalRdf(), and Init().

◆ sKinEnergy

double sKinEnergy

Definition at line 21 of file global.h.

Referenced by AccumProps().

◆ solver

char solver[128]

extern

Referenced by EvalProps(), Init(), and ReadBinaryRestart().

◆ spacetimeCorr

double ** spacetimeCorr

Definition at line 94 of file global.h.

Referenced by AllocArrays(), Close(), and EvalSpacetimeCorr().

◆ spacetimeCorrAv

double * spacetimeCorrAv

Definition at line 94 of file global.h.

Referenced by AllocArrays(), Close(), EvalSpacetimeCorr(), and SetupJob().

◆ speed

double* speed

extern

Referenced by Close(), and Init().

◆ sPotEnergy

double sPotEnergy

Definition at line 21 of file global.h.

Referenced by AccumProps().

◆ sPressure

double sPressure

Definition at line 22 of file global.h.

Referenced by AccumProps().

◆ SqrRadiusIJ

double SqrRadiusIJ

Definition at line 27 of file global.h.

Referenced by ComputeForcesCells(), and ComputePairForce().

◆ ssKinEnergy

double ssKinEnergy

Definition at line 22 of file global.h.

Referenced by AccumProps().

◆ ssPotEnergy

double ssPotEnergy

Definition at line 22 of file global.h.

Referenced by AccumProps().

◆ ssPressure

double ssPressure

Definition at line 22 of file global.h.

Referenced by AccumProps().

◆ ssTotEnergy

double ssTotEnergy

Definition at line 22 of file global.h.

Referenced by AccumProps().

◆ stepAcf

int stepAcf

Definition at line 100 of file global.h.

Referenced by AccumVacf(), Init(), and PrintVacf().

◆ stepAvg

int stepAvg

Definition at line 24 of file global.h.

Referenced by AccumProps(), Init(), and main().

◆ stepCorr

int stepCorr

Definition at line 95 of file global.h.

Referenced by EvalSpacetimeCorr(), and Init().

◆ stepCount

int stepCount

Definition at line 24 of file global.h.

Referenced by BrownianStep(), HaltConditionCheck(), Init(), LeapfrogStep(), main(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ stepDump

int stepDump

Definition at line 24 of file global.h.

Referenced by Init(), and main().

◆ stepEquil

int stepEquil

Definition at line 24 of file global.h.

Referenced by BrownianStep(), Init(), LeapfrogStep(), and ReadBinaryRestart().

◆ stepLimit

int stepLimit

Definition at line 24 of file global.h.

Referenced by Init(), main(), and ReadBinaryRestart().

◆ stepRdf

int stepRdf

Definition at line 104 of file global.h.

Referenced by Init().

◆ stepTraj

int stepTraj

Definition at line 24 of file global.h.

Referenced by Init(), and main().

◆ sTotEnergy

double sTotEnergy

Definition at line 22 of file global.h.

Referenced by AccumProps().

◆ strain

double strain

extern

Referenced by ApplyShear(), Init(), and ReadBinaryRestart().

◆ strainRate

double strainRate

Definition at line 44 of file global.h.

Referenced by Init(), and ReadBinaryRestart().

◆ strech

double strech

extern

Referenced by ComputeBondForce(), and ComputePairForce().

◆ stress

char stress[256]

extern

◆ svirSum

double svirSum

Definition at line 21 of file global.h.

Referenced by AccumProps().

◆ timeNow

double timeNow

Definition at line 20 of file global.h.

Referenced by DumpBonds(), DumpPairs(), DumpRestart(), DumpState(), EvalCom(), EvalRdf(), HaltConditionCheck(), Init(), main(), PrintCom(), PrintForceSum(), PrintMomentum(), PrintStress(), PrintSummary(), PrintVrms(), ReadBinaryRestart(), Trajectory(), and WriteBinaryRestart().

◆ TotalBondEnergy

double TotalBondEnergy

extern

Referenced by ComputeBondForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ TotalMass

double TotalMass

Definition at line 32 of file global.h.

Referenced by EvalCom().

◆ totEnergy

double totEnergy

Definition at line 20 of file global.h.

Referenced by AccumProps(), EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ uSum

double uSum

Definition at line 21 of file global.h.

Referenced by ComputeForcesCells().

◆ uSumPair

double uSumPair

extern

Referenced by ComputePairForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ uSumPairPerAtom

double uSumPairPerAtom

Definition at line 88 of file global.h.

Referenced by EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ virSum

double virSum

Definition at line 21 of file global.h.

Referenced by AccumProps(), ComputeForcesCells(), EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ virSumBond

double virSumBond

extern

Referenced by ComputeBondForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumBondxx

double virSumBondxx

Definition at line 89 of file global.h.

Referenced by ComputeBondForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumBondxy

double virSumBondxy

Definition at line 89 of file global.h.

Referenced by ComputeBondForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumBondyy

double virSumBondyy

Definition at line 89 of file global.h.

Referenced by ComputeBondForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumPair

double virSumPair

Definition at line 88 of file global.h.

Referenced by ComputePairForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumPairxx

double virSumPairxx

Definition at line 88 of file global.h.

Referenced by ComputePairForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumPairxy

double virSumPairxy

Definition at line 88 of file global.h.

Referenced by ComputePairForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumPairyy

double virSumPairyy

Definition at line 88 of file global.h.

Referenced by ComputePairForce(), EvalProps(), ReadBinaryRestart(), and WriteBinaryRestart().

◆ virSumxx

double virSumxx

extern

Referenced by EvalProps(), and PrintStress().

◆ virSumxy

double virSumxy

Definition at line 90 of file global.h.

Referenced by EvalProps(), and PrintStress().

◆ virSumyy

double virSumyy

Definition at line 90 of file global.h.

Referenced by EvalProps(), and PrintStress().

◆ visc

char visc[256]

extern

◆ viscAcf

double ** viscAcf

Definition at line 99 of file global.h.

Referenced by AccumVacf(), AllocArrays(), Close(), and EvalVacf().

◆ viscAcfAv

double * viscAcfAv

Definition at line 99 of file global.h.

Referenced by AccumVacf(), AllocArrays(), Close(), PrintVacf(), and ZeroVacf().

◆ viscAcfInt

double viscAcfInt

Definition at line 99 of file global.h.

Referenced by AccumVacf(), and PrintVacf().

◆ viscAcfOrg

double * viscAcfOrg

Definition at line 99 of file global.h.

Referenced by AllocArrays(), Close(), and EvalVacf().

◆ VMeanSqr

double VMeanSqr

Definition at line 46 of file global.h.

Referenced by EvalVrms().

◆ vrms

char vrms[256]

extern

Referenced by main().

◆ VRootMeanSqr

double VRootMeanSqr

Definition at line 46 of file global.h.

Referenced by EvalVrms(), main(), and PrintVrms().

◆ VSqr

double VSqr

extern

Referenced by EvalVrms().

◆ vSum

double vSum

Definition at line 21 of file global.h.

Referenced by EvalProps(), HaltConditionCheck(), and PrintSummary().

◆ vSumX

double vSumX

Definition at line 21 of file global.h.

Referenced by EvalProps(), and PrintMomentum().

◆ vSumY

double vSumY

Definition at line 21 of file global.h.

Referenced by EvalProps(), and PrintMomentum().

◆ vvSum

double vvSum

Definition at line 21 of file global.h.

Referenced by EvalProps(), and LeapfrogStep().

◆ vx

double * vx

Definition at line 17 of file global.h.

Referenced by ApplyBoundaryCond(), ApplyDrivingForce(), ApplyViscous(), BrownianStep(), Close(), ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), DumpRestart(), DumpState(), EvalProps(), EvalVacf(), EvalVrms(), Init(), LeapfrogStep(), ReadBinaryRestart(), Trajectory(), VelocityVerletStep(), and WriteBinaryRestart().

◆ vy

double * vy

Definition at line 17 of file global.h.

Referenced by ApplyBoundaryCond(), ApplyDrivingForce(), ApplyViscous(), BrownianStep(), Close(), ComputeBondForce(), ComputeForcesCells(), ComputePairForce(), DumpRestart(), DumpState(), EvalProps(), EvalVacf(), EvalVrms(), Init(), LeapfrogStep(), ReadBinaryRestart(), Trajectory(), VelocityVerletStep(), and WriteBinaryRestart().

◆ xBoundary

char xBoundary[10]

extern

Referenced by ApplyBoundaryCond(), Init(), and ReadBinaryRestart().

◆ xyz

char xyz[256]

extern

Referenced by main().

◆ yBoundary

char yBoundary[10]

Definition at line 68 of file global.h.

Referenced by ApplyBoundaryCond(), Init(), and ReadBinaryRestart().

Macros

Typedefs

Variables

Macro Definition Documentation

◆ EXTERN

◆ NDIM

◆ SignR

◆ Sqr

Typedef Documentation

◆ real

Variable Documentation

◆ atom1

◆ atom2

◆ atomID

◆ atomIDInterface

◆ atomMass

◆ atomRadius

◆ atomType

◆ ax

◆ ay

◆ bigDiameter

◆ bond

◆ BondEnergy

◆ BondEnergyPerAtom

◆ BondID

◆ BondLength

◆ BondPairFlag

◆ BondType

◆ cellList

◆ cells

◆ cfOrg

◆ cfVal

◆ com

◆ ComX

◆ ComX0

◆ ComXRatio

◆ ComY

◆ ComY0

◆ ComYRatio

◆ countAcfAv

◆ countCorrAv

◆ countRdf

◆ DampFlag

◆ deltaT

◆ DeltaX

◆ DeltaY

◆ density

◆ discDragx

◆ discDragy

◆ dnsty

◆ dump

◆ dumpPairFlag

◆ fax

◆ fay

◆ force

◆ forceSumxExtern

◆ forceSumyExtern

◆ fpbond

◆ fpcom

◆ fpdnsty

◆ fpdump

◆ fpforce

◆ fpmomentum

◆ fppair

◆ fprdf

◆ fpresult

◆ fpstress

◆ fpvisc

◆ fpvrms

◆ fpxyz

◆ freezeAtomType

◆ frfAtom

◆ fuSum

◆ fvirSum

◆ fx

◆ fxByfy

◆ fxExtern

◆ fy

◆ FyBylx

◆ fyExtern